species:   Rhsol
pid:       PID0516
parent:    Rhi-milR-168
paralog:   
locus:     KB317711.1:275026-275119
matures:   ['UUGGCUUGAAUAUCUUGGUGAUGG', 'GUUCCAAGUUCAUUCUUUCU']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317711.1:275026-275119

18 out of bounds
42 alignments
42 proper strand
38 stranded perfect matches

            *********************                         *************************           
UAGGUGAGUUGACGUUCCAAGUUCAUUCUUUCUAUCCUCAAUAUGAUGUUUGUGAGGCAUUUGGCUUGAAUAUCUUGGUGAUGGAGCCCAUCGC
..((((.(((..(((((((((((((..((......(((((..(......)..))))).....))..))))...))))).)))).))).))))..
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=2 c
-------------GUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=20 a=0 c*
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUG----------- l=23 a=6 ma
--------------UUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=19 a=0 ma*

-------------------------------------UCAAUAUGAUGUUUGUGAGG------------------------------------- l=20 a=1 
--------------------------------------CAAUAUGAUGUUUGUGAGGC------------------------------------ l=20 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=27 a=3 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUG----------- l=24 a=2 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGG---------- l=25 a=1 
-----------------------------------------------------------UUUaGCUUGAAUAUCUUGGUGAUGG---------- l=25 a=1 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=26 a=5 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=27 a=2 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUG-------------- l=20 a=1 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUG----------- l=23 a=6 (ma)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=2 (c)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=4 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=26 a=1 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGG---------- l=23 a=2 
-------------------------------------------------------------UGGCUUuAAUAUCUUGGUGAUGG---------- l=23 a=1 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGA--------- l=24 a=2 
-------------------------------------------------------------UGaCUUGAAUAUCUUGGUGAUGGA--------- l=24 a=1 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGAG-------- l=25 a=3 
---------------------------------------------------------------GCgUGAAUAUCUUGGUGAUGGA--------- l=22 a=1 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUGGA--------- l=22 a=1 
----------------------------------------------------------------CUUGAAUAUCUUGGUGAU------------ l=18 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101000
fn-111
